rs2279541 chr7:87934864 G>C
- Sequence
cggatgagctggtccaaggctctc[G/C]ggctggtgtctctgcgtccttccc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) MS-1 (Small cell lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.18 | 1.71 | 1.00 | 3.66 | Concordant |
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Motif analysis
