rs2280098 chr11:72585828 T>C

Sequence
tctcagccgccttcacgccagctc[T/C]agctgcctaggtgttgctgtagtg
ASB in cell types
T47D (invasive ductal carcinoma) THP-1 (acute monocytic leukemia) MM1.S (plasma cell myeloma) spleen
ASB for transcription factors
CTCF_HUMAN KDM5B_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.08 0.37 0.011.00 1.42 n/a No Hit
KDM5B_HUMAN 2.02 -0.54 0.031.00 1.00 n/a n/a
STAT1_HUMAN 2.11 n/a 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Putamen_basal_ganglia,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Whole_Blood

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