rs2282173 chr3:119463595 G>C
- Sequence
ctgatacttcagcacccatcccta[G/C]cctccattaccgcggagctgagca
- ASB in cell types
- 22RV1 (prostate carcinoma) GM10847 (female B-cells Lymphoblastoid Cell Lines) primary B-CLL cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN CTCF_HUMAN BRD4_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.75 | 0.32 | 1.56 | n/a | No Hit | |||
| CTCF_HUMAN | 1.08 | 0.28 | 1.17 | n/a | No Hit | |||
| BRD4_HUMAN | 1.16 | -0.09 | 1.61 | n/a | n/a | |||
| RAD21_HUMAN | 2.03 | 0.07 | 1.17 | n/a | n/a | |||
| TF65_HUMAN | 2.53 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid