rs228273 chr17:38751870 C>T

Sequence
cacagagaccgagtcgactaccgg[C/T]gtagtagtgagccgagtcaatggg
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia) CD34+ hematopoietic stem cells
ASB for transcription factors
RFOX2_HUMAN MNT_HUMAN ZNF24_HUMAN TIF1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFOX2_HUMAN -1.62 2.52 1.003.2·10-3 2.00 n/a n/a
MNT_HUMAN 0.04 1.38 1.009.2·10-3 2.00 n/a n/a
ZNF24_HUMAN 0.09 0.81 1.000.02 1.86 n/a n/a
TIF1B_HUMAN 0.43 2.00 1.000.02 1.75 n/a n/a
SUMO2_HUMAN 0.46 1.55 1.000.02 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  height,  microalbuminuria,  mitral annular calcium
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Thyroid,  Whole_Blood

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