rs228599 chr11:108236933 G>A

Sequence
attaacaagatgattttaagtcag[G/A]tgtcaaagtcttctaatacacgaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) MDM(monocyte derived macrophages)
ASB for transcription factors
MEF2B_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN 1.87 2.16 0.040.84 1.50 n/a No Hit
SPI1_HUMAN 0.40 2.52 0.700.05 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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