rs2287163 chr12:106955516 C>T
- Sequence
aaacaccgggcctgggggccgcgg[C/T]ctacgcgtctcccgggcttcgcgc
- ASB in cell types
- K562 (myelogenous leukemia) 226LDM (normal breast luminal cells) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- EGR1_HUMAN ZBT7A_HUMAN RBM25_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 3.45 | -3.70 | 2.25 | n/a | No Hit | |||
| ZBT7A_HUMAN | 0.63 | 1.94 | 1.72 | n/a | No Hit | |||
| RBM25_HUMAN | -0.42 | 2.24 | 1.50 | n/a | n/a | |||
| BRD4_HUMAN | 1.33 | 0.06 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid