rs2287885 chr5:40756124 G>T
- Sequence
ctgaagagcgcaccgagaggagcc[G/T]cccccgcggtaccgcgcagcctcg
- ASB in cell types
- foreskin keratinocyte breast tumor CD14+ monocytes MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ESR1_HUMAN STAT1_HUMAN JUN_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.95 | -0.54 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.46 | 0.23 | 1.88 | n/a | No Hit | |||
| CTCF_HUMAN | 0.71 | 0.39 | 1.25 | n/a | No Hit | |||
| STAG1_HUMAN | -0.09 | 1.52 | 1.08 | n/a | n/a |
Items per page:
1 – 5 of 5