rs228867 chr6:133947684 G>A
- Sequence
tctctgctcttgaaagattaacca[G/A]ttggcagtagtgctggcaaggtaa
- ASB in cell types
- LNCaP (prostate carcinoma) CD34+ hematopoietic stem cells-derived proerythroblasts pancreas
- ASB for transcription factors
- FOXA1_HUMAN GATA1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.34 | -0.19 | 1.55 | n/a | No Hit | |||
| GATA1_HUMAN | 2.90 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.12 | 0.43 | 1.17 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP cystatin c in serum, endometriosis, ldl cholesterol, microalbuminuria, refractive error, spine bone mineral density (bmd), total cholesterol, urinary albumin-to-creatinine ratio
GTEx eQTL Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Skin_Sun_Exposed_Lower_leg, Whole_Blood