rs2289149 chr16:66408503 C>T
- Sequence
gctgtgctgaacaagagtcttttg[C/T]tttcagatcagactctgggcagga
- ASB in cell types
- HepG2 (hepatoblastoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- GABPA_HUMAN SPI1_HUMAN TEAD3_HUMAN KAT8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 0.05 | 3.39 | 1.90 | n/a | No Hit | |||
| SPI1_HUMAN | 0.63 | 2.06 | 2.50 | n/a | No Hit | |||
| TEAD3_HUMAN | n/a | 2.76 | 2.00 | n/a | n/a | |||
| KAT8_HUMAN | -5.08 | 3.00 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood