rs2290311 chr3:12841572 T>A
- Sequence
cggtggcgcgcaagggctgatggg[T/A]cgtaacccctgggtcctagcaggg
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes 22RV1 (prostate carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.40 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.96 | -4.65 | 1.71 | n/a | No Hit | |||
| ESR1_HUMAN | 1.92 | 0.16 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), infant head circumference, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Whole_Blood