rs2292068 chr17:7350340 T>C

Sequence
ggctgacgccgaaacagaagcctg[T/C]gctgtggggcctcggaaaggggct
ASB in cell types
HMEC (human mammary epithelial cells)
ASB for transcription factors
NRF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN -4.17 2.85 1.003.5·10-4 1.33 5.07 Concordant
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Motif analysis

NRF1_HUMAN Concordant
NRF1_HUMAN pic

Genetic associations

GRASP adiponectin levels,  birth weight,  hdl cholesterol,  hypertension (early onset hypertension),  neuroblastoma (brain cancer),  sporadic creutzfeldt-jakob disease,  transmission distortion,  triglycerides
GTEx eQTL Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Muscle_Skeletal,  Nerve_Tibial

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