rs2294227 chr1:25819901 C>G

Sequence
ctcctgagggtgcgcggaggtgcg[C/G]ctcggtgcgcagctgcggaggatc
ASB in cell types
CD14+ monocytes primary B-CLL cells
ASB for transcription factors
STAT1_HUMAN CDK9_HUMAN BC11B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN n/a 3.72 1.005.8·10-5 2.00 n/a No Hit
CDK9_HUMAN 1.87 -0.60 0.021.00 1.00 n/a n/a
BC11B_HUMAN -3.51 1.97 1.000.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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