rs2294994 chr20:62833145 G>A
- Sequence
ggctggggaacagtcctggggaca[G/A]ggtcaaaatctgcagctcccggtg
- ASB in cell types
- primary B-CLL cells LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- BRD4_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.75 | -0.32 | 2.33 | n/a | n/a | |||
| ZFX_HUMAN | 1.80 | -0.32 | 2.20 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood