rs2296443 chr1:2590953 G>A

Sequence
ttcgcacagatgcctccgagcagc[G/A]ggtgggcgtgggccgcacagcgcg
ASB in cell types
WA01 (H1, human embryonic stem cells)
ASB for transcription factors
BHE40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BHE40_HUMAN -1.41 1.41 1.000.02 1.00 4.14 Concordant
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Motif analysis

BHE40_HUMAN Concordant
BHE40_HUMAN pic

Genetic associations

GRASP diabetic retinopathy in type 2 diabetes mellitus,  salmonella-induced pyroptosis
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Muscularis,  Lung,  Pancreas,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid,  Whole_Blood

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