rs2297140 chr1:85580878 C>A
- Sequence
ccctcgcctccctgcccaccgggc[C/A]caccgcgccgccaccccgaccccg
- ASB in cell types
- neural cell
- ASB for transcription factors
- SMC3_HUMAN ARNT_HUMAN ETS1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -1.95 | 2.39 | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | -2.24 | 2.50 | 1.00 | 5.30 | Concordant | |||
| ETS1_HUMAN | 1.89 | -1.56 | 1.00 | n/a | No Hit |
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Motif analysis
