rs2298999 chr4:109990751 T>C
- Sequence
ggccacctgctcactgtgttctca[T/C]atggccttccctctttgatgtgga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood
- ASB for transcription factors
- FOXK2_HUMAN NFXL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -2.16 | 2.54 | 1.50 | n/a | n/a | |||
| NFXL1_HUMAN | n/a | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP autism, cystatin c in serum, homa-b, hypertension (early onset hypertension), salmonella-induced pyroptosis, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic