rs2301286 chr1:161166434 C>A
- Sequence
gccgcgagaacagagtggacggag[C/A]gtaggagagaccgaaaaggctggg
- ASB in cell types
- HEK293 (embryonic kidney) MOLT-4 (Adult T acute lymphoblastic leukemia) hMADS-3 (adipose-derived stem cells) breast tumor
- ASB for transcription factors
- ZN335_HUMAN EGR2_HUMAN ZFHX2_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN335_HUMAN | 1.81 | n/a | 2.00 | n/a | No Hit | |||
| EGR2_HUMAN | 2.96 | n/a | 2.00 | 0.85 | Weak Discordant | |||
| ZFHX2_HUMAN | 1.43 | n/a | 2.00 | n/a | n/a | |||
| CDK9_HUMAN | 1.75 | -0.38 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 1.31 | 1.65 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, fasting blood glucose, fasting insulin, hdl cholesterol, homa-b, homa-ir, ldl cholesterol, microalbuminuria, triglycerides change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood