rs230304 chr1:39817146 A>G
- Sequence
gaggcccatggagggacagtgacc[A/G]gctcaggtggtagaaccaatcaga
- ASB in cell types
- K562 (myelogenous leukemia) GM02630 (Fanconi anemi) GM19240 (B cells Lymphoblastoid Cell Lines) HMEC (human mammary epithelial cells)
- ASB for transcription factors
- RING2_HUMAN NFIC_HUMAN STAG1_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RING2_HUMAN | 3.25 | -3.24 | 1.00 | n/a | n/a | |||
| NFIC_HUMAN | 3.12 | n/a | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.52 | -0.57 | 1.25 | n/a | n/a | |||
| ARI1B_HUMAN | 2.54 | -2.26 | 1.00 | n/a | n/a | |||
| TEAD4_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit |
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