rs2303370 chr2:27428508 C>T
- Sequence
aggggaggagagcgggtggaagcc[C/T]accccagcgaacgcccgagggccg
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma)
- ASB for transcription factors
- RBM25_HUMAN GABP1_HUMAN ZBT11_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -0.99 | 2.37 | 2.00 | n/a | n/a | |||
| GABP1_HUMAN | n/a | 2.40 | 2.00 | n/a | n/a | |||
| ZBT11_HUMAN | n/a | 3.52 | 2.00 | n/a | n/a | |||
| TCF21_HUMAN | n/a | 2.24 | 2.00 | n/a | n/a | |||
| ZBT40_HUMAN | -2.15 | 2.15 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood