rs2306363 chr11:65638129 G>T
- Sequence
ccggcgccgggagcggtagcggga[G/T]agcggcagcgggaccccagcgcgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.28 | -1.31 | 2.00 | n/a | No Hit | |||
| ELF1_HUMAN | -0.27 | 2.35 | 1.17 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI diastolic blood pressure, diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test), diastolic blood pressure x alcohol consumption interaction (2df test), hdl cholesterol, mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test), mean arterial pressure x alcohol consumption interaction (2df test), medication use (agents acting on the renin-angiotensin system), pulse pressure, systolic blood pressure, systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test), systolic blood pressure x alcohol consumption interaction (2df test)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood