rs2306415 chr4:121696476 C>G
- Sequence
agcgatgtccccaaagcaggttcc[C/G]tttcctcctaaactttttggctct
- ASB in cell types
- 22RV1 (prostate carcinoma) prostate gland GM12891 (male B- cells lymphoblastoid cell line) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.76 | 0.73 | 1.32 | n/a | No Hit | |||
| STAT1_HUMAN | 2.90 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.02 | -0.90 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol change with statins
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Whole_Blood