rs2306978 chr10:132223228 G>A
- Sequence
tcagtgctgctacctaaacccctg[G/A]cgccagaggacagcagagggatct
- ASB in cell types
- pancreas GM19240 (B cells Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) thyroid gland
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN CHD8_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.96 | 1.07 | 1.41 | 0.69 | Weak Concordant | |||
| STAG1_HUMAN | -0.68 | 0.49 | 1.25 | n/a | n/a | |||
| CHD8_HUMAN | -1.91 | 2.35 | 1.00 | n/a | n/a |
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Motif analysis
