rs2309824 chr2:100285199 G>A

Sequence
ttctccaaaaatgtgcaggatgcc[G/A]ataagagctgggagggtgaactct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KDM1A_HUMAN MTA2_HUMAN NFIC_HUMAN RING2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KDM1A_HUMAN 2.86 -1.91 6.2·10-41.00 2.00 n/a n/a
MTA2_HUMAN 3.38 n/a 1.8·10-31.00 2.00 n/a n/a
NFIC_HUMAN 3.12 -5.64 6.9·10-31.00 2.00 3.32 Discordant
RING2_HUMAN 3.07 n/a 7.7·10-31.00 2.00 n/a n/a
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Motif analysis

NFIC_HUMAN Discordant
NFIC_HUMAN pic

Genetic associations

GRASP college completion,  salmonella-induced pyroptosis,  years of education
GTEx eQTL Artery_Aorta,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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