rs231981 chr3:172520708 A>G

Sequence
acatgctagacccagaggtatact[A/G]atgagcagaagcagacacagctct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MTA2_HUMAN IKZF2_HUMAN FOXK2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTA2_HUMAN 2.63 -2.29 4.5·10-31.00 1.00 n/a n/a
IKZF2_HUMAN 1.63 -0.66 0.051.00 1.00 n/a n/a
FOXK2_HUMAN n/a 2.19 1.000.05 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy) infant head circumference ldl cholesterol triglycerides
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum

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