rs232562 chr2:38168854 A>T
- Sequence
aacagaggaagaaatgcgctgaag[A/T]ttacacaattaggacgtgtaagga
- ASB in cell types
- keratinocytes JB6 (Human anaplastic large cell lymphoma) SU-DHL-1 (Anaplastic large cell lymphoma)
- ASB for transcription factors
- CEBPB_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.87 | -2.56 | 1.50 | -4.02 | Concordant | |||
| SNAI2_HUMAN | 2.53 | -3.08 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood