rs2330027 chr22:22201283 G>A
- Sequence
aatttgcctgcagaccagcagggg[G/A]cgcggtgagaacttctctgtgtat
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) HeLa (cervical adenocarcinoma) foreskin keratinocyte K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.29 | -0.21 | 1.97 | -4.42 | Concordant |
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Motif analysis
