rs2332478 chr16:1475255 G>C
- Sequence
ggcggccccgttgggctgagcgcc[G/C]agtgcttgggaggcgaatggccgc
- ASB in cell types
- primary B-CLL cells HCC1806(Squamous cell breast carcinoma, acantholytic variant) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- TYY1_HUMAN BRD4_HUMAN BRD2_HUMAN USF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.97 | 2.31 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 2.87 | 0.34 | 1.43 | n/a | n/a | |||
| BRD2_HUMAN | 1.15 | -0.11 | 1.67 | n/a | n/a | |||
| USF2_HUMAN | n/a | 2.59 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid