rs234014 chr3:172635718 T>C
- Sequence
gactttacaaagactcataggtga[T/C]acttcctccaatgactcatcttcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte CTV-1 (Adult T acute lymphoblastic leukemia) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | 1.39 | 1.29 | n/a | No Hit | |||
| SPI1_HUMAN | -1.27 | 1.54 | 1.50 | 2.63 | Concordant | |||
| IKZF2_HUMAN | -0.27 | 1.39 | 1.00 | n/a | n/a |
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Motif analysis
