rs2341365 chr1:1013312 G>A

Sequence
tgccgtccgctgtccggagtcccc[G/A]ccacttttgcttttccctgtcttt
ASB in cell types
HEK293 (embryonic kidney) CD14+ monocytes
ASB for transcription factors
ZN366_HUMAN KLF9_HUMAN STAT1_HUMAN PATZ1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN366_HUMAN n/a 3.91 1.001.8·10-5 2.00 n/a n/a
KLF9_HUMAN n/a 3.87 1.009.5·10-5 2.00 n/a No Hit
STAT1_HUMAN n/a 2.87 1.002.1·10-3 3.00 n/a No Hit
PATZ1_HUMAN n/a 3.08 1.004.8·10-3 2.00 -0.93 Weak Discordant
KLF10_HUMAN n/a 3.22 1.007.6·10-3 2.00 n/a n/a
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Motif analysis

PATZ1_HUMAN Weak Discordant
PATZ1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Pancreas,  Spleen,  Stomach,  Whole_Blood

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