rs235877 chr1:171645165 T>C
- Sequence
gttttcctgtcctgcgtccatagg[T/C]ggtatgactgtgaggacatttgtt
- ASB in cell types
- K562 (myelogenous leukemia) THP-1 (acute monocytic leukemia) T47D (invasive ductal carcinoma) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN KDM6A_HUMAN CREB1_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.58 | 0.86 | 1.50 | n/a | No Hit | |||
| KDM6A_HUMAN | n/a | 2.95 | 3.00 | n/a | n/a | |||
| CREB1_HUMAN | 0.36 | 1.75 | 1.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.17 | 1.24 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid