rs236445 chr6:36755795 G>C
- Sequence
ctctggagtgagatgtcatgttga[G/C]tcccatctctaccactttctagct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ESR1_HUMAN ERR1_HUMAN GATA3_HUMAN FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.05 | 2.86 | 2.11 | 4.12 | Concordant | |||
| ERR1_HUMAN | -3.67 | 4.03 | 1.00 | n/a | No Hit | |||
| GATA3_HUMAN | -0.24 | 2.25 | 1.75 | n/a | No Hit | |||
| FOS_HUMAN | -2.71 | 1.51 | 1.33 | n/a | n/a | |||
| STAT1_HUMAN | -0.26 | 1.26 | 2.50 | n/a | No Hit |
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Motif analysis
