rs236448 chr6:36735318 A>C

Sequence
acccatagacttaactctgaagtt[A/C]tgcaactgcttacaggaagatgcg
ASB in cell types
tibial nerve CD14+ monocytes upper lobe of left lung gastroesophageal sphincter
ASB for transcription factors
EP300_HUMAN CTCF_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN 2.24 -0.39 3.2·10-111.00 1.31 n/a n/a
CTCF_HUMAN 1.35 -0.21 4.5·10-51.00 1.03 n/a No Hit
STAT1_HUMAN 2.51 n/a 5.5·10-31.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  comorbid depressive syndrome and alcohol dependence,  diastolic blood pressure (dbp),  height,  sporadic creutzfeldt-jakob disease,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Esophagus_Mucosa,  Heart_Atrial_Appendage,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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