rs237778 chr1:229299251 A>G
- Sequence
tgttcttatcaggatgaaagcccc[A/G]tccttatcaggatggtttccatgg
- ASB in cell types
- HepG2 (hepatoblastoma) YCC3 (gastric adenocarcinoma)
- ASB for transcription factors
- TBX3_HUMAN RFX1_HUMAN SP130_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX3_HUMAN | -0.19 | 2.11 | 1.00 | n/a | No Hit | |||
| RFX1_HUMAN | -0.27 | 1.10 | 1.50 | n/a | No Hit | |||
| SP130_HUMAN | -1.75 | 2.14 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Whole_Blood