rs238288 chr20:5611257 T>G

Sequence
gagagctgccctggggtcataggc[T/G]tgtactgtggtccaccaaagccgc
ASB in cell types
HepG2 (hepatoblastoma) MDM(monocyte derived macrophages)
ASB for transcription factors
RBM25_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN 2.37 -1.09 1.4·10-51.00 1.50 n/a n/a
TYY1_HUMAN 2.32 -0.86 6.0·10-51.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  scaling relationship between occipital and total cortical surface area,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Nerve_Tibial

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