rs238767 chr19:6517111 G>A
- Sequence
ggagaaaaggggcccagagtgatt[G/A]ttcctcaggggagggagggggagg
- ASB in cell types
- HEK293 (embryonic kidney) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) esophagus squamous epithelium
- ASB for transcription factors
- STAG1_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -1.88 | 2.28 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | 1.55 | 0.04 | 2.12 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, total cholesterol