rs239933 chr6:166999742 A>G

Sequence
ccgcggactgggggtgcctggccc[A/G]tcccctgcctcattccgtgggggc
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia) adult erythroblasts
ASB for transcription factors
TYY1_HUMAN ILF3_HUMAN RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 1.90 -0.48 0.021.00 2.50 n/a No Hit
ILF3_HUMAN -0.89 1.79 1.000.03 1.00 n/a n/a
RBBP5_HUMAN 2.10 -1.05 0.051.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Vagina,  Whole_Blood

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