rs241785 chr17:28239219 A>T
- Sequence
caaggtcgtctagctatttatctt[A/T]cttctgtttctttccaactttttg
- ASB in cell types
- foreskin keratinocyte K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.75 | 0.40 | 1.42 | n/a | No Hit | |||
| STAG1_HUMAN | 1.08 | -0.48 | 1.06 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood