rs2419171 chr1:16727271 G>A
- Sequence
ctcttttctcttatcccccaggcc[G/A]tgggtgtgtagaggccttggtggt
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) hESC-3 (Embryonic stem cells) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- PRDM9_HUMAN ZNF34_HUMAN ZN184_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM9_HUMAN | 2.95 | n/a | 2.00 | n/a | n/a | |||
| ZNF34_HUMAN | 3.26 | n/a | 2.00 | n/a | n/a | |||
| ZN184_HUMAN | 3.09 | n/a | 2.00 | n/a | n/a | |||
| GCR_HUMAN | 1.74 | 0.40 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.58 | -1.52 | 2.50 | n/a | n/a |
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Motif analysis
