rs2426681 chr20:56788386 G>C
- Sequence
ctgcaacaaatatttacagaaggt[G/C]tctgcatgccagccttattctgag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LR-SK-BR-3 (lapatinib-resistant breast adenocarcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TF65_HUMAN MNT_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.83 | 0.38 | 2.26 | n/a | No Hit | |||
| TF65_HUMAN | 2.40 | -1.43 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | 1.93 | -0.45 | 2.17 | n/a | n/a | |||
| CREB1_HUMAN | 1.84 | -0.45 | 2.83 | n/a | No Hit | |||
| RBM25_HUMAN | 0.86 | -1.63 | 1.50 | n/a | n/a |
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