rs242971 chr10:117478477 T>C
- Sequence
ctgaagctcccaaggcaacgtgtg[T/C]aggctctagttagagcactttgga
- ASB in cell types
- foreskin keratinocyte GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.02 | 0.66 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, rheumatoid arthritis, salmonella-induced pyroptosis, sporadic creutzfeldt-jakob disease