rs2448129 chr10:26684732 C>T
- Sequence
tctcatatgtatatacacacacca[C/T]acactgtatatgagagtatgtcat
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) GM10847 (female B-cells Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.56 | -0.63 | 1.70 | n/a | No Hit |
Items per page:
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Thyroid, Whole_Blood