ADASTRA v5.1.3
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rs244903
chr5:168486505
G
>
A
Sequence
tgagacgctgatgggaggatggac[G/A]tactggtgtctgagtgctccgcgc
ASB in cell types
MOLT-4 (Adult T acute lymphoblastic leukemia)
MCF7 (Invasive ductal breast carcinoma)
T47D (invasive ductal carcinoma)
foreskin keratinocyte
Show more
(+2 others)
ASB for transcription factors
GABPA_HUMAN
SPT5H_HUMAN
HCFC1_HUMAN
TEAD3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN
0.10
1.07
1.00
2.3·10
-5
1.64
n/a
No Hit
SPT5H_HUMAN
1.04
1.25
1.00
3.5·10
-3
1.12
n/a
n/a
HCFC1_HUMAN
1.59
0.17
0.02
0.97
2.67
n/a
n/a
TEAD3_HUMAN
2.00
-1.67
0.04
1.00
1.00
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
age at death with kuru exposure
,
asthma
,
carboplatin ic50 in b lymphoblastoid cell lines
,
irritible bowel syndrome
,
partial epilepsy
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Liver
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Uterus
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)