rs2452680 chr11:66052212 A>G
- Sequence
gaccgccgaggggccactagagaa[A/G]ggtgcgtctgcggcgaatcccgtc
- ASB in cell types
- HEK293 (embryonic kidney) monocytes from periferal blood CD14+ monocytes adult erythroblasts
- ASB for transcription factors
- RBBP5_HUMAN SRBP2_HUMAN STAT1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.16 | -3.43 | 1.33 | n/a | n/a | |||
| SRBP2_HUMAN | 2.60 | -0.32 | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.55 | -0.25 | 1.80 | n/a | No Hit | |||
| TF65_HUMAN | 1.48 | -0.52 | 3.60 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.29 | -3.73 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, fasting insulin, height, microalbuminuria, systolic blood pressure (sbp)
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood