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rs245596 chr5:162683484 A>T

Sequence
caacctctacaattagtttcgtag[A/T]gccaagaagaaagttccccttttg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN IKZF2_HUMAN COT1_HUMAN NFAC3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 2.41 -2.39 5.2·10-51.00 1.25 n/a No Hit
IKZF2_HUMAN 2.43 -2.15 1.8·10-41.00 1.00 n/a n/a
COT1_HUMAN 1.79 -1.53 0.031.00 1.00 n/a No Hit
NFAC3_HUMAN 2.36 -2.38 0.041.00 1.00 n/a No Hit
ZN217_HUMAN 2.51 -2.35 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose fasting insulin homa-b homa-ir total cholesterol

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