rs2458 chr8:133455823 G>A
- Sequence
cttggtttcctttcacttgttttc[G/A]ggctgcttcaaagcaaacatccca
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- SMC3_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.45 | 0.60 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.65 | 1.05 | 1.00 | n/a | n/a |
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