ADASTRA v5.1.3
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rs2465132
chr1:1038976
T
>
C
Sequence
cagccctcatgactatacttacag[T/C]ggcagcagacgggccacatagcgc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
HEK293 (embryonic kidney)
ASB for transcription factors
PRD10_HUMAN
FOXK2_HUMAN
BHE40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRD10_HUMAN
n/a
4.10
1.00
3.9·10
-6
2.00
n/a
n/a
FOXK2_HUMAN
-5.64
3.30
1.00
1.9·10
-3
2.00
n/a
n/a
BHE40_HUMAN
-3.77
2.11
1.00
0.02
1.50
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Cells_Cultured_fibroblasts
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)