rs2470192 chr15:51403456 G>A
- Sequence
agttcatgtttcttctgctgctca[G/A]tggcaccctctggtgttttctttt
- ASB in cell types
- foreskin keratinocyte MS-1 (Small cell lung carcinoma) SH-SY5Y (neuroblastoma) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.75 | 2.21 | 1.06 | n/a | n/a | |||
| CTCF_HUMAN | 0.72 | 1.23 | 1.30 | -2.24 | Discordant | |||
| RAD21_HUMAN | -0.08 | 1.17 | 1.34 | n/a | n/a | |||
| SMC3_HUMAN | -0.70 | 1.93 | 1.75 | n/a | n/a |
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Motif analysis
