rs2473351 chr1:15416193 T>C
- Sequence
tccacccttcctgccttctccggc[T/C]tcctcgctctcctccatgctacct
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- NR2C1_HUMAN COT1_HUMAN TAF9B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 1.76 | -0.65 | 1.00 | n/a | No Hit | |||
| COT1_HUMAN | 1.39 | -1.13 | 1.00 | 1.13 | Weak Discordant | |||
| TAF9B_HUMAN | 2.46 | -2.49 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Thyroid, Whole_Blood