rs248245 chr5:179838261 G>A
- Sequence
ccattctgctacctcccaccgggg[G/A]gcagctctccagagcctgccgggt
- ASB in cell types
- IMR-5 (Neuroblastoma) glioblastoma cells LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.89 | -0.23 | 1.48 | -4.34 | Concordant | |||
| RAD21_HUMAN | 2.77 | -4.93 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood