rs248689 chr5:127668198 T>C

Sequence
tttggctggaagcctctcttcact[T/C]agctgaaatggcactctgcatgtt
ASB in cell types
D341 Med (medulloblastoma)
ASB for transcription factors
OTX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OTX2_HUMAN 1.42 0.69 0.031.00 1.03 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  height,  microalbuminuria,  prop taste detection threshold,  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Testis,  Thyroid

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